Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
4QG3 Chain:A ((5-227))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMVPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
4QG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110763 for 1765 contacts (-62.8/contact) +
2D Compatibility (PS) -24132 + (NN) -11940 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5500
Total energy: -168515.0 ( -95.48 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4QG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QG3-query.scw
PDB file :
Tito_Scwrl_4QG3.pdb
: