Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLEN------PPNHINNIESLENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
1X06 Chain:A ((19-240))
-----RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQID-----EEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE--------
General information:
TITO was launched using:
RESULT:
Template:
1X06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103880 for 1690 contacts (-61.5/contact) +
2D Compatibility (PS) -22941 + (NN) -9411 + (LL) 1232
1D Compatibility (HY) -14400 + (ID) 4800
Total energy: -154200.0 ( -91.24 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1X06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X06-query.scw
PDB file :
Tito_Scwrl_1X06.pdb
: