Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREIVWVHSQRIAPYKTLILNELHYYPLE------SDLTPFNALIFTSKNAVFSLLETLNNSPK--------LKMLQNIPAYALSEPTAKTLQDHHFKTAFIGKKAHGKEFAKEILPL-LEKKSVLYLRAKEIASSLDTILLEHGINLQQAVVYENKLKHLTLSEQ-NA-LKPQEKSVLIFTAISHAKAFLHYFEF-----LKSYTAISIGNTTAHYLQEQGIQS-YTAQKPSLESCLELALNLKS
1JR2 Chain:A ((28-259))
------------LEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQ
General information:
TITO was launched using:
RESULT:
Template:
1JR2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104220 for 1484 contacts (-70.2/contact) +
2D Compatibility (PS) -22618 + (NN) -4626 + (LL) 1728
1D Compatibility (HY) -2400 + (ID) 1900
Total energy: -134036.0 ( -90.32 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1JR2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JR2-query.scw
PDB file :
Tito_Scwrl_1JR2.pdb
: