Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQAIYNETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV
4GFQ Chain:A ((25-209))
MGQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV
General information:
TITO was launched using:
RESULT:
Template:
4GFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35556 for 1317 contacts (-27.0/contact) +
2D Compatibility (PS) -20011 + (NN) -5567 + (LL) 0
1D Compatibility (HY) -12400 + (ID) 3900
Total energy: -77434.0 ( -58.80 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_4GFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFQ-query.scw
PDB file :
Tito_Scwrl_4GFQ.pdb
: