Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
2QCX Chain:A ((28-241))
MKFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSFTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPG--HPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRK
General information:
TITO was launched using:
RESULT:
Template:
2QCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142385 for 1688 contacts (-84.4/contact) +
2D Compatibility (PS) -22605 + (NN) -7438 + (LL) 280
1D Compatibility (HY) -14400 + (ID) 3650
Total energy: -190198.0 ( -112.68 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2QCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QCX-query.scw
PDB file :
Tito_Scwrl_2QCX.pdb
: