Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFGLKQFYQNEVRAKLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLVAGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFDGRGNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAKVR
4U67 Chain:D ((3-179))
--QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK--
General information:
TITO was launched using:
RESULT:
Template:
4U67.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80952 for 1224 contacts (-66.1/contact) +
2D Compatibility (PS) -18720 + (NN) -5516 + (LL) 632
1D Compatibility (HY) -17200 + (ID) 4650
Total energy: -126406.0 ( -103.27 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4U67.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U67-query.scw
PDB file :
Tito_Scwrl_4U67.pdb
: