Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHDFLKAFKDAFPHTISIFLGYLLMGMTFGMLLAQQGYDYKVALFMSLFIYAGAIQFVAITLLSAQASLMNVVIVSLLVNA---RQTCYALSMLDRFKNTKWRLPYLAHALTDETFALLNLYAPKKGVNETDFMFSISLLNHSYWIFGSLVGSLVGSHFSFDTQGMEFVMTAIFIVLFMEQYKRNTNHKNAWLGIAIAVVCLALFGTEYFLLIALVLMVLALILFRKQLEC |
4RGA Chain:A ((198-273)) | -----------------------------------------------------------------------VAVQSIPINGVANRPVSSTASQLTNYK--VWRNPYLCSQDPRDKFAPDNLVIEEDGIYRIDISGSINIANYTFPASGNSWRVGGRYFQIVCARNSSANNLAEFGAEQHLPPSGVWTRRVLVGEYTAGMTEQAFSSVATISLFKGDNFFLQFETGTNTSRD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7892 for 284 contacts (-27.8/contact) +
2D Compatibility (PS) -6948 + (NN) 6492 + (LL) 6776
1D Compatibility (HY) 0 + (ID) 1100
Total energy: -2672.0 ( -9.41 by residue)
QMean score : -0.278
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