Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
4JG4 Chain:A ((5-69))
-------------KKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQAE--------------------NDELRVGLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKAASQLTYEETKKSLQHLWRKSSLYKK-----------------
General information:
TITO was launched using:
RESULT:
Template:
4JG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7871 for 305 contacts (-25.8/contact) +
2D Compatibility (PS) -7038 + (NN) -3381 + (LL) 3156
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -19784.0 ( -64.87 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4JG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JG4-query.scw
PDB file :
Tito_Scwrl_4JG4.pdb
: