Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LATGIGTAKMILCGEHAVVYGEPAISVPFTQAVVTTNVETSIKTKFSSAFFSGDLD----------------DMPDF---LAGIKALVVDVLNEIGNGECVSIHVVSGVPIGRGLGSSAAVATSIARGLYKYFNQELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDR----KLEIMHFPKKITF-VVADTGVPSETRDAVKDVQVLYKENQVEIGKIIHQLGDISREIKTHLEGDADTVKIGAAMNKAQSYLETLTVSDSSLEKLIKVARSNGADGAKLTGGGRGGCIIAVAKNQEIAEQITKALHNAGAAQEWIFTIGEGSYESDSHRTHECGAN |
1KKH Chain:A ((12-291)) | -------SKVILFGEHAVVYGYRAISMAID---LTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKN-TLDYLN-IEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKI--ENKDEIFKEIDKVIDEALKIKNKED-------FGKLMTKNHELLKKLNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILV-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135958 for 2103 contacts (-64.6/contact) +
2D Compatibility (PS) -27900 + (NN) -12099 + (LL) 3932
1D Compatibility (HY) -17200 + (ID) 4200
Total energy: -193425.0 ( -91.98 by residue)
QMean score : 0.484
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