Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILINVMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLLMFVLAPFVFQ-NIPSNNWIVLGTF-GF-ILLNMFL----FAPADTESLPLIGEEHRKTLKRKAMIGTLILTGIALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE
4PD8 Chain:A ((304-382))
---------------------------------------------------------------------------------------------LLGWLFAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46580 for 439 contacts (-106.1/contact) +
2D Compatibility (PS) -7201 + (NN) -559 + (LL) 11728
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -49562.0 ( -112.90 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_4PD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PD8-query.scw
PDB file :
Tito_Scwrl_4PD8.pdb
: