Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYP--NDRFAINIAPQQLFY-IETLHWL-DKLKSESHR---ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3GFX Chain:A ((178-394))
------QFALQAIVEPAKKRVSSFEALIR--SPTGGSPV-EMFAAIAAEDRYRFDLESKAYAFA-LAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTE--------TEVITCFDQFRKVLKALRVA---GMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAI-VASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRP---
General information:
TITO was launched using:
RESULT:
Template:
3GFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113658 for 1655 contacts (-68.7/contact) +
2D Compatibility (PS) -22443 + (NN) -9522 + (LL) 832
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -160041.0 ( -96.70 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3GFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFX-query.scw
PDB file :
Tito_Scwrl_3GFX.pdb
: