Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADSKSFTFELNESVLTAQVGRLDEMAMVVEQRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKNHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIAFITNIFTTIVTIIGAAFQMVFTVASKIWNSIMSTISGIIDGIKAVITGISTTVSSVFN--------GVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGV--EIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS |
| 4OHU Chain:A ((23-128)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTG-FDRLR-----LIQRITDRLPAKAPLLELDVQNEEHLASLAGR-VTEAIGAGNKLDGVVHSIGFMPQTGMGINPF------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OHU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -37993 for 574 contacts (-66.2/contact) +
2D Compatibility (PS) -10271 + (NN) -1051 + (LL) 42684
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -11331.0 ( -19.74 by residue)
QMean score : 0.132
|
|
|