Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKFDLENGYVVKADGEMLVGGKFVVFKDSMKNWEPPYENKKLSESEVQEIIQQVKQSTNENTVQISFE
2B4W Chain:A ((78-116))
-SWELEDPYIAKINNEMIFGGT----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2B4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6212 for 78 contacts (-79.6/contact) +
2D Compatibility (PS) -2313 + (NN) -651 + (LL) 3728
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -7348.0 ( -94.21 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2B4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B4W-query.scw
PDB file :
Tito_Scwrl_2B4W.pdb
: