Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIILKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAALMEEIKRRFGDTL
1YSF Chain:A ((3-53))
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPN-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12298 for 209 contacts (-58.8/contact) +
2D Compatibility (PS) -5338 + (NN) 13 + (LL) 2908
1D Compatibility (HY) -7200 + (ID) 1700
Total energy: -23615.0 ( -112.99 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_1YSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSF-query.scw
PDB file :
Tito_Scwrl_1YSF.pdb
: