Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPL----AQTQTMSLYQQLEAGIRYIDIRAK---DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDT-----SNKIPTLKDVRGKILLLSE-NHTKKPLVINSRKFGMQF------------GAPNQVIQDDYNGPSVK--TKFKEIVQTAYQASKADNKL--FLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
| 4RV3 Chain:A ((4-281)) | -----------------------------------------SKSPENWMSKLDDGKHLTEINIPGSHDSGSF------TLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKV---TKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYAS-INPEIAKTI--KANGKAR-TGWLIVDY---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RV3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -89568 for 1850 contacts (-48.4/contact) +
2D Compatibility (PS) -25748 + (NN) -7630 + (LL) 4048
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -138948.0 ( -75.11 by residue)
QMean score : 0.520
|
|
|