Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKAKSKVARIENRYIKDTATMKKTRSRR--RIALFRRLAFMAI---------IFAVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKLARSEYYLSKDGEIIFNIPEENSKQKE |
2O8D Chain:B ((141-251)) | ------KVARVEQ---TETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7122 for 198 contacts (36.0/contact) +
2D Compatibility (PS) -5775 + (NN) 6320 + (LL) 5380
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: 9147.0 ( 46.20 by residue)
QMean score : 0.096
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