Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRIGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFPDTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK
3GHZ Chain:A ((4-159))
-MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMK
General information:
TITO was launched using:
RESULT:
Template:
3GHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111337 for 1324 contacts (-84.1/contact) +
2D Compatibility (PS) -17108 + (NN) -9563 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 4850
Total energy: -156650.0 ( -118.32 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3GHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHZ-query.scw
PDB file :
Tito_Scwrl_3GHZ.pdb
: