Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKAKQIYLEFKREADFLELDFPLFLGDGPGFGELCMDYSEQDGYMLYGYEHGKRNSEFKTTDFDEFKYEVFLHICWYMGMEF--ELRHRKEDIERDDNILETDTRKIAFEKTLQLLKMVNPAWIDKAAIGYSNYLNLWRKNKNVYFDKEAMQFKVNL
3KV5 Chain:D ((376-423))
-------------------------------------------GMQLRCYEMEKR---LKTPDL--FKFPFFEAICWFVAKNLLETLKELRED-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11969 for 176 contacts (-68.0/contact) +
2D Compatibility (PS) -4552 + (NN) -1881 + (LL) 7780
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -16322.0 ( -92.74 by residue)
QMean score : -0.164
(partial model without unconserved sides chains):
PDB file :
Tito_3KV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KV5-query.scw
PDB file :
Tito_Scwrl_3KV5.pdb
: