Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIP-VWDLADVPEALLLLKKISS
2OM6 Chain:A ((97-230))
------------------------------ESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFADEVLSY----KPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQE----GDKVRKLEERGFEIPSIANLKDVIE----------
General information:
TITO was launched using:
RESULT:
Template:
2OM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37414 for 959 contacts (-39.0/contact) +
2D Compatibility (PS) -14287 + (NN) -9284 + (LL) 3388
1D Compatibility (HY) -10000 + (ID) 1950
Total energy: -69547.0 ( -72.52 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_2OM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OM6-query.scw
PDB file :
Tito_Scwrl_2OM6.pdb
: