Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKSTTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKQVYDHPVNMFVAGFIGSPAMNFFKGRLEGSNFIGDDFTIEVPEGKLKLLKDRGFDGKNIVFGIRPEDIHDEPIVIEANPGYTFKATTIV--AELTGAEFMLHSRVGTHEFVARVDARSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD |
| 1VCI Chain:A ((10-369)) | MVEVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ------HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQ--MDLLKD--YVGKTVLFGIRPEHMTVEGV----HMKRTARLIGKVDFVEALGTDTILHVKFGDELVKVKLPGHIPIEPGREVKVIMDLDMIHVFDKDTE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VCI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233051 for 2749 contacts (-84.8/contact) +
2D Compatibility (PS) -37918 + (NN) -17908 + (LL) 1048
1D Compatibility (HY) -36000 + (ID) 8500
Total energy: -332329.0 ( -120.89 by residue)
QMean score : 0.514
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