Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVPEGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEVRSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVFLGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGYFSIRKNKKWMKNFEFKKVDEEVK |
| 1AFO Chain:A ((92-97)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYGIRR------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141 for 14 contacts (-10.1/contact) +
2D Compatibility (PS) -549 + (NN) 485 + (LL) 20056
1D Compatibility (HY) -400 + (ID) 100
Total energy: 19351.0 ( 1382.21 by residue)
QMean score : 0.100
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