Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPD----GDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
1RLU Chain:A ((239-297))
---------------------KAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANII-----FGTV--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6028 for 295 contacts (-20.4/contact) +
2D Compatibility (PS) -5775 + (NN) -2063 + (LL) 4564
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -13202.0 ( -44.75 by residue)
QMean score : -0.009
(partial model without unconserved sides chains):
PDB file :
Tito_1RLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLU-query.scw
PDB file :
Tito_Scwrl_1RLU.pdb
: