Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGAL---EGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVEVEQIAY
2VEP Chain:A ((4-241))
LELLPAVDVRDGQAVRLVHGESGTETSYGS-PLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIK----VELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETL-DRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEATSL--
General information:
TITO was launched using:
RESULT:
Template:
2VEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -208546 for 2234 contacts (-93.4/contact) +
2D Compatibility (PS) -25402 + (NN) -9309 + (LL) 576
1D Compatibility (HY) -16000 + (ID) 4550
Total energy: -263231.0 ( -117.83 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2VEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VEP-query.scw
PDB file :
Tito_Scwrl_2VEP.pdb
: