Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDGEYVYYVHSYYANCPEEYIIATSGYSIEV-PGMINKGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1K9V Chain:F ((44-200))
--------------------------------------DLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR---RLPHMGWNEVIFKDTFP------NGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSR-----
General information:
TITO was launched using:
RESULT:
Template:
1K9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85782 for 1248 contacts (-68.7/contact) +
2D Compatibility (PS) -16904 + (NN) -4575 + (LL) 3436
1D Compatibility (HY) -16400 + (ID) 3300
Total energy: -123525.0 ( -98.98 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1K9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K9V-query.scw
PDB file :
Tito_Scwrl_1K9V.pdb
: