Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDS--ESRASVLKRLFGGTKE-NVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK
3IGJ Chain:A ((5-189))
-KTEKDKMLAGEMYIADDEELVADRVEAKRLTRLYNEAVETGDERRFTLLNQLLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIE----
General information:
TITO was launched using:
RESULT:
Template:
3IGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138046 for 1463 contacts (-94.4/contact) +
2D Compatibility (PS) -20345 + (NN) -11593 + (LL) 672
1D Compatibility (HY) -20400 + (ID) 5850
Total energy: -195562.0 ( -133.67 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3IGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IGJ-query.scw
PDB file :
Tito_Scwrl_3IGJ.pdb
: