Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEGEIPEKYRSVDEEEINRSFGGSLP--AVHAVVKSYLQIIWVTKWTE
3VW4 Chain:A ((44-71))
---------------EMYNASLPVPLSPAECRAIGKSIAKYTH------
General information:
TITO was launched using:
RESULT:
Template:
3VW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3929 for 104 contacts (-37.8/contact) +
2D Compatibility (PS) -2719 + (NN) -1767 + (LL) 1656
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -8309.0 ( -79.89 by residue)
QMean score : 0.112
(partial model without unconserved sides chains):
PDB file :
Tito_3VW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VW4-query.scw
PDB file :
Tito_Scwrl_3VW4.pdb
: