Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDFGAFSNERTDYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEFEGGRHAKRVEMIARIEDEND
3PH4 Chain:A ((21-166))
MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQGGRHATRVGKIGEIEKK--
General information:
TITO was launched using:
RESULT:
Template:
3PH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102665 for 1231 contacts (-83.4/contact) +
2D Compatibility (PS) -16100 + (NN) -7602 + (LL) -156
1D Compatibility (HY) -12800 + (ID) 4350
Total energy: -143673.0 ( -116.71 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3PH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PH4-query.scw
PDB file :
Tito_Scwrl_3PH4.pdb
: