Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNINMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF-WEEDDNV
2LYK Chain:A ((5-66))
----NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE---
General information:
TITO was launched using:
RESULT:
Template:
2LYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33333 for 418 contacts (-79.7/contact) +
2D Compatibility (PS) -6852 + (NN) -4285 + (LL) 432
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -51888.0 ( -124.13 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_2LYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYK-query.scw
PDB file :
Tito_Scwrl_2LYK.pdb
: