Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDTLITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALPEDNMDVVTGVNIPMLLETLSMRAASNQKD-LVETALTAGSGGVKSLKQSLPKIETEVGEDDL
1VSQ Chain:A ((2-129))
--IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK---------------
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69777 for 958 contacts (-72.8/contact) +
2D Compatibility (PS) -14363 + (NN) -9055 + (LL) 872
1D Compatibility (HY) -16000 + (ID) 3450
Total energy: -111773.0 ( -116.67 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: