Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLCTISDSQALLEVSYKTFDETFRAQNKPENMDAYLKTNFTAKKLSDELKNP-HSYFYFVFHQEA--IAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKKGLGKELFNQAIEIAKEVDAKKIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQTDIIMIKDL
2CY2 Chain:A ((3-169))
-IRRAGLEDLPGVARVLVDTWRATYRGVV-PEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAF--GPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDL
General information:
TITO was launched using:
RESULT:
Template:
2CY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75135 for 1249 contacts (-60.2/contact) +
2D Compatibility (PS) -17684 + (NN) -3342 + (LL) 396
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -107465.0 ( -86.04 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2CY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CY2-query.scw
PDB file :
Tito_Scwrl_2CY2.pdb
: