Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPATGELVVGATK-QAEQAFKNLAAVLEEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIEVIAEA
2DYY Chain:A ((2-123))
--KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-NDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIA--
General information:
TITO was launched using:
RESULT:
Template:
2DYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44167 for 893 contacts (-49.5/contact) +
2D Compatibility (PS) -13174 + (NN) -6489 + (LL) 776
1D Compatibility (HY) -11600 + (ID) 3100
Total energy: -77754.0 ( -87.07 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_2DYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYY-query.scw
PDB file :
Tito_Scwrl_2DYY.pdb
: