Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDDKLQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSKQIGKTARLVRQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFEVKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQVEKTLQEELATFLNQFYEDPNNIQPKELLIAEKIDKSLLNEPLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKEYDFEIQLNNH |
| 1YD2 Chain:A ((1-90)) | MKEKIRKKILLAPEEPGVFIFKNKGVPI-YIGKAKRLSNRLRSYLNP-QTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNVR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37842 for 619 contacts (-61.1/contact) +
2D Compatibility (PS) -9684 + (NN) -9079 + (LL) 19028
1D Compatibility (HY) -7600 + (ID) 1850
Total energy: -47027.0 ( -75.97 by residue)
QMean score : 0.653
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