Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKD-GFEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
4OF1 Chain:A ((1-112))
-MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNALMISLGL---
General information:
TITO was launched using:
RESULT:
Template:
4OF1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61900 for 802 contacts (-77.2/contact) +
2D Compatibility (PS) -12049 + (NN) -3872 + (LL) 604
1D Compatibility (HY) -13200 + (ID) 3750
Total energy: -94167.0 ( -117.42 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4OF1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OF1-query.scw
PDB file :
Tito_Scwrl_4OF1.pdb
: