Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGYYSPQEVTEITIEKGTQKANSSTLTLVLLGFLGGAFISLGYLLYIRAV---GTMPHEWGSFATLIGASLFPVGLVCILLGGGELITGNMMAVAIAWYDKKISFQQLLRNWAIVSVMNLVGAFF---VAYFFGHFVGLTEGDFLPKTLATAGAKINDPFWVAFVSGIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGYYSWADFIW---------------------NVIPVYLGNVVGGAVFVSLFYFLAYKKNAPKKVKEEIHQPIEEN
3Q7K Chain:A ((13-274))
------AAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGAMPY---GMAKLIGGICFSLGLILCVICGADLFTSTVLIV-VAKASGRITWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYM-TANGQWGLNVLQTADHKMHHTFIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFATPEF-WTAVGSSPESFSHLTVMSFITDNLIPVTIGNIIGGGLLVGLTY-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3Q7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -240853 for 1973 contacts (-122.1/contact) +
2D Compatibility (PS) -23672 + (NN) -2572 + (LL) 2048
1D Compatibility (HY) -28800 + (ID) 4150
Total energy: -297999.0 ( -151.04 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_3Q7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q7K-query.scw
PDB file :
Tito_Scwrl_3Q7K.pdb
: