Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1LQY Chain:A ((1-176))
MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPADPFQVP-------
General information:
TITO was launched using:
RESULT:
Template:
1LQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89893 for 1381 contacts (-65.1/contact) +
2D Compatibility (PS) -18841 + (NN) -8343 + (LL) 52
1D Compatibility (HY) -21200 + (ID) 5150
Total energy: -143375.0 ( -103.82 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1LQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQY-query.scw
PDB file :
Tito_Scwrl_1LQY.pdb
: