Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDMPFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFDGPFLEYLRNFKFKGNILAAKEGEFVFKTE------PILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEFGTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAFR---SYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDS-----GDMAFLSKKARQMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKMAAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENVDKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWDEYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF |
| 1YTD Chain:A ((70-298)) | -------------------------------------------------------------------------------------------------DLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMI-DRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDE-EAWKLTLENTKNGQKSVLLIDTYMDEKFA---AIKIA-EMFDKVDY--IRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLR--EAGAEAFGVGTSISSA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94596 for 1643 contacts (-57.6/contact) +
2D Compatibility (PS) -23280 + (NN) -8694 + (LL) 19908
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -124562.0 ( -75.81 by residue)
QMean score : 0.329
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