Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDILYKKTQAVEYFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFSPMFASIFAKPV-IGIVTKVDLAESDKD-IERAERELRMAGAKHIFYISSVEETGIEELRAYLED
2YWF Chain:A ((57-174))
-------------------KMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEI------
General information:
TITO was launched using:
RESULT:
Template:
2YWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27375 for 725 contacts (-37.8/contact) +
2D Compatibility (PS) -12126 + (NN) 902 + (LL) 2128
1D Compatibility (HY) -7600 + (ID) 1500
Total energy: -45571.0 ( -62.86 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_2YWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWF-query.scw
PDB file :
Tito_Scwrl_2YWF.pdb
: