Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
4TMY Chain:A ((2-112))
----GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45051 for 906 contacts (-49.7/contact) +
2D Compatibility (PS) -11815 + (NN) -5362 + (LL) 7384
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -66494.0 ( -73.39 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_4TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMY-query.scw
PDB file :
Tito_Scwrl_4TMY.pdb
: