Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAKIEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLA---SLKDGPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILETDIPAIVARGRKGGSNLAAAIINAILITM
1V9C Chain:A ((8-201))
---------IEEESFRIVDQ---EAGP-HGF-SPLEWPVVRRMIHATADFEYKALTRFSQGAVEAGLKAIQAGARILVDARMIACGLNPERLRLFGNEVVELLAHPEVVAR------TRAEAAVAYAWEKGLLDG-AIVGVGNAPTFLLALVEAIRQGARPA-LVLGMPVGFVNVLEAKRALMEAPVPWIVTEGRKGGSTLVVAALHALI---
General information:
TITO was launched using:
RESULT:
Template:
1V9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153957 for 1589 contacts (-96.9/contact) +
2D Compatibility (PS) -20538 + (NN) -5519 + (LL) 1504
1D Compatibility (HY) -13200 + (ID) 3400
Total energy: -195110.0 ( -122.79 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_1V9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9C-query.scw
PDB file :
Tito_Scwrl_1V9C.pdb
: