Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKAILVVSFGTSYPETREKTIEACEKRVAHEFPDYTVFRAFTSNKIIKKLKTRDNMHINTPSQALNQLKELGYKEVIIQSLHIISGGEFEKITAQVEKFKP---DFDSIIVSQPLLDSMEDYEKAIEAIRHQMPP-LKEQEALILMGHGSKHHAFSAYACLDHML--LNEPIYLCAVESYPGLDQVIERLQQADIKKAHLMPFMLVAGDHATNDMASDEENSWKSTLEQAGIQTECHLQGLGENPLIQSQFIDHIHTAIERVKTRG
2XVY Chain:A ((9-269))
-KTGILLVAFGTSVEEAR-PALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRA-EGIAAPSPAEALAGMAEEGFTHVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPADRKPGEPVVFMGHGTPHPADICYPGLQYYLWRLDPDLLVGTVEGSPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPVLHGTAESDAVAAIWLRHLDDALARLN---
General information:
TITO was launched using:
RESULT:
Template:
2XVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207118 for 2219 contacts (-93.3/contact) +
2D Compatibility (PS) -28112 + (NN) -13092 + (LL) 392
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -269630.0 ( -121.51 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_2XVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XVY-query.scw
PDB file :
Tito_Scwrl_2XVY.pdb
: