Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTS--FYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
3TQU Chain:A ((6-199))
--EIVLASQNSSKLAEMQELLRDLEIKFIPQTEF-SVPDIEETGSTFVENAIIKARHAAKQTGLPALADDSGLTIAALNSAPGVFSSRYAGKNATDAERIQKVLEALEAADDSDRSASFHCVIALMENENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQRTAAELDPQEKNAISHRGQALEQLSTVLTE--------
General information:
TITO was launched using:
RESULT:
Template:
3TQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83418 for 1529 contacts (-54.6/contact) +
2D Compatibility (PS) -20608 + (NN) -10980 + (LL) 964
1D Compatibility (HY) -11200 + (ID) 3900
Total energy: -129142.0 ( -84.46 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3TQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQU-query.scw
PDB file :
Tito_Scwrl_3TQU.pdb
: