Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPNADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
2D5A Chain:A ((11-133))
----TDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVANRCM--------
General information:
TITO was launched using:
RESULT:
Template:
2D5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108944 for 999 contacts (-109.1/contact) +
2D Compatibility (PS) -13450 + (NN) -3754 + (LL) 956
1D Compatibility (HY) -8400 + (ID) 2100
Total energy: -135692.0 ( -135.83 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_2D5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5A-query.scw
PDB file :
Tito_Scwrl_2D5A.pdb
: