Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV
4KDD Chain:A ((1-184))
MIDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE-
General information:
TITO was launched using:
RESULT:
Template:
4KDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46101 for 1323 contacts (-34.8/contact) +
2D Compatibility (PS) -20445 + (NN) -12740 + (LL) 192
1D Compatibility (HY) -14400 + (ID) 4750
Total energy: -98244.0 ( -74.26 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4KDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KDD-query.scw
PDB file :
Tito_Scwrl_4KDD.pdb
: