Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGV----ALILPEKAYFVT-DFRYTEQAAKQAEGYEIV-----QHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNR-QLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRA-GATSSSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLLITETGNEILIHSPKELIIL |
| 4RGZ Chain:A ((8-367)) | --RIHKFQAHFGKKGFEGALVAPGSNFYYLTGFNPLGTLERLFVLILPSEGLLTAIAPRLYEKELEEFNG-EVVLWSDSENPYKIFATKIKETFKEGEKLLI--DDTMPVGVFLKAKDIFDKYSLHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLGIDVHEEPYISPGNKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVDKKGIRLTNADRELITL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141903 for 2861 contacts (-49.6/contact) +
2D Compatibility (PS) -37276 + (NN) -13402 + (LL) 508
1D Compatibility (HY) -20800 + (ID) 6500
Total energy: -219373.0 ( -76.68 by residue)
QMean score : 0.408
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