Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
1VP7 Chain:A ((14-75))
-RPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGD------------
General information:
TITO was launched using:
RESULT:
Template:
1VP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 17069 for 317 contacts (53.8/contact) +
2D Compatibility (PS) -6729 + (NN) -3649 + (LL) 492
1D Compatibility (HY) 1600 + (ID) 500
Total energy: 8283.0 ( 26.13 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_1VP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP7-query.scw
PDB file :
Tito_Scwrl_1VP7.pdb
: