Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGLARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLPK
4MHW Chain:A ((17-188))
--NVRL--LTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLF----RQKTAPLKLAPVL---LGTF-VAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFI--
General information:
TITO was launched using:
RESULT:
Template:
4MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173515 for 1376 contacts (-126.1/contact) +
2D Compatibility (PS) -17743 + (NN) -3690 + (LL) 1616
1D Compatibility (HY) -25200 + (ID) 3400
Total energy: -221932.0 ( -161.29 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_4MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHW-query.scw
PDB file :
Tito_Scwrl_4MHW.pdb
: