Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPK-----LAKEADLTSDAYIKLALQLMTK
1BVS Chain:A ((5-201))
----VRGEVLEVALDHAVIEAAGIGYRV-NATPSALATLNQGSQARLVTAMVVREDSMTLYGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLELADKVGPV------------NAVRG------SVVEALVGLGFAAKQAEEATDQVLDGE-------ATSSALRAALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
1BVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94337 for 1197 contacts (-78.8/contact) +
2D Compatibility (PS) -18670 + (NN) -8601 + (LL) 2748
1D Compatibility (HY) -10400 + (ID) 2950
Total energy: -132210.0 ( -110.45 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1BVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BVS-query.scw
PDB file :
Tito_Scwrl_1BVS.pdb
: