Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQMVDLINQLRP-DYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLL--EKEDIEPP---KLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDPVAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK
3R9J Chain:A ((2-258))
-ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN-LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILAS----GEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEE----------------
General information:
TITO was launched using:
RESULT:
Template:
3R9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169352 for 2103 contacts (-80.5/contact) +
2D Compatibility (PS) -26295 + (NN) -7657 + (LL) 1720
1D Compatibility (HY) -23600 + (ID) 5650
Total energy: -230834.0 ( -109.76 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3R9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9J-query.scw
PDB file :
Tito_Scwrl_3R9J.pdb
: