Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVA--SDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGV----KNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
2V5H Chain:A ((50-287))
--RTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIID----------------
General information:
TITO was launched using:
RESULT:
Template:
2V5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172117 for 1930 contacts (-89.2/contact) +
2D Compatibility (PS) -25399 + (NN) -5349 + (LL) 820
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -226445.0 ( -117.33 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2V5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V5H-query.scw
PDB file :
Tito_Scwrl_2V5H.pdb
: