Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGEKEFRRLEHEKLK-ELATTKAVIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRLKGDTTRPLVQQK-TAEEIRAIFEPRIAHYQDSADFIVNTDNRNQQEVAQTILTMLDK
1L4Y Chain:A ((12-166))
-GSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAG-HTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL--
General information:
TITO was launched using:
RESULT:
Template:
1L4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51984 for 1113 contacts (-46.7/contact) +
2D Compatibility (PS) -17022 + (NN) -9650 + (LL) 248
1D Compatibility (HY) -7200 + (ID) 2850
Total energy: -88458.0 ( -79.48 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1L4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4Y-query.scw
PDB file :
Tito_Scwrl_1L4Y.pdb
: